Removed the MLProp special case, no longer needed as MLProp decompiles fine.
Updated patches to work on all systems.
Added warning and exit if the user does not say yes to the cleanup.
On windows they no longer need the user to press enter every step
Moved version info out to version.txt, This will only effect the svn. If you update the version do it in version.txt not in ForgeHooks.java.
Introduced the build number into the version string.
Cleaned up some extra echos in scripts.
Major refactoring of the patches, now each modified file gets its own patch file.
Rewrote all the scripts to use new multi-patch system.
Added linux install.sh using new system.
Added some required libraries from GNUWin32 for the windows side of the new setup.bat/update_patches.bat http://gnuwin32.sourceforge.net/