--- commands.py
+++ commands.py
@@ -126,8 +126,8 @@
 
 
 def truncate(text, length):
-    if len(text) > length:
-        return text[:length] + '...'
+    #if len(text) > length:
+    #    return text[:length] + '...'
     return text
 
 
@@ -139,6 +139,8 @@
             fieldnames = csvreader.fieldnames
     return set(fieldnames)
 
+def commands_sanity_check():
+    print '    Commands patch applied successfully'
 
 class Commands(object):
     """Contains the commands and initialisation for a full mcp run"""
@@ -950,6 +952,8 @@
         binlk = {CLIENT: self.binclient, SERVER: self.binserver}
         testlk = {CLIENT: self.testclient, SERVER: self.testserver}
 
+        if side == SERVER and not os.path.exists(os.path.join(binlk[side], os.path.normpath(testlk[side] + '.class'))):
+            return self.checkbins(CLIENT)
         if not os.path.exists(os.path.join(binlk[side], os.path.normpath(testlk[side] + '.class'))):
             return False
         return True
@@ -1281,23 +1285,34 @@
         pathbinlk = {CLIENT: self.binclient, SERVER: self.binserver}
         pathsrclk = {CLIENT: self.srcclient, SERVER: self.srcserver}
         pathlog = {CLIENT: self.clientrecomplog, SERVER: self.serverrecomplog}
+        
+        if side == SERVER: #Warn about server because FML recombines it into client
+            self.logger.info('Server side recompiling might be skipped, this is normal, do not complain to FML/Forge team about server side.')
 
         if not os.path.exists(pathbinlk[side]):
             os.makedirs(pathbinlk[side])
 
         # HINT: We create the list of source directories based on the list of packages
         # on windows we just pass wildcards, otherwise we pass the full file list
-        if self.osname == 'win':
+        if self.osname == 'win' and False == True: #FML: Disable for windows we write to file now
             all_files = False
             append_pattern = True
         else:
             all_files = True
             append_pattern = False
         pkglist = filterdirs(pathsrclk[side], '*.java', append_pattern=append_pattern, all_files=all_files)
+        from tempfile import NamedTemporaryFile
         if self.cmdrecompscala: # Compile scala before java as scala scans java files, but not vice-versa
             pkglistscala = pkglist[:]
             pkglistscala.extend(filterdirs(pathsrclk[side], '*.scala', append_pattern=append_pattern, all_files=all_files))
-            dirs = ' '.join(pkglistscala)
+            f = NamedTemporaryFile(mode='wb', suffix='.txt', prefix ='scala_src_path_', delete=False) #FML: We write to a temporary file just in case the command is to long
+            for line in pkglistscala:
+                if os.sep == '\\':
+                    f.write('"%s"\n' % os.path.abspath(line).replace(os.sep, os.sep + os.sep))
+                else:
+                    f.write('"%s"\n' % os.path.abspath(line))
+            f.close()
+            dirs = '@"%s"' % f.name
             classpath = os.pathsep.join(cplk[side])
             forkcmd = self.cmdrecompscala.format(classpath=classpath, sourcepath=pathsrclk[side], outpath=pathbinlk[side], pkgs=dirs)
             try:
@@ -1317,7 +1332,15 @@
                 self.logger.error('================================')
                 self.logger.error('')
                 raise
-        dirs = ' '.join(pkglist)
+            os.unlink(f.name)
+        f = NamedTemporaryFile(mode='wb', suffix='.txt', prefix ='java_src_path_', delete=False) #FML: We write to a temporary file just in case the command is to long
+        for line in pkglist:
+            if os.sep == '\\':
+                f.write('"%s"\n' % os.path.abspath(line).replace('\\', '\\\\'))
+            else:
+                f.write('"%s"\n' % os.path.abspath(line))
+        f.close()
+        dirs = '@"%s"' % f.name
         classpath = os.pathsep.join(cplk[side])
         forkcmd = self.cmdrecomp.format(classpath=classpath, sourcepath=pathsrclk[side], outpath=pathbinlk[side],
                                         pkgs=dirs)
@@ -1336,9 +1359,10 @@
             self.logger.error('==================')
             self.logger.error('')
             raise
+        os.unlink(f.name)
 
     def startserver(self, mainclass, extraargs):
-        classpath = [self.binserver] + self.cpathserver
+        classpath = [self.binclient, self.srcclient] + self.cpathserver + self.cpathclient
         classpath = [os.path.join('..', p) for p in classpath]
         classpath = os.pathsep.join(classpath)
         os.chdir(self.dirjars)
@@ -1703,7 +1727,7 @@
         self.runcmd(forkcmd)
         return True
 
-    def gathermd5s(self, side, reobf=False):
+    def gathermd5s(self, side, reobf=False, skip_fml=False):
         if not reobf:
             md5lk = {CLIENT: self.md5client, SERVER: self.md5server}
         else:
@@ -1718,6 +1742,9 @@
                     class_path = ''
                 else:
                     class_path += '/'
+                if skip_fml:
+                    if class_path.startswith('cpw/'):
+                        continue
                 for class_file in fnmatch.filter(filelist, '*.class'):
                     class_name = class_path + os.path.splitext(class_file)[0]
                     bin_file = os.path.normpath(os.path.join(path, class_file))
@@ -1890,6 +1917,9 @@
                 sys.exit(1)
 
         for entry in newfiles:
+            if 'commands.py' in entry[0]: #FML, Disable updating of Commands.py
+                print 'Update to runtime/commands.py found, but disbled due to using fml'
+                continue
             if entry[3] == 'U':
                 self.logger.info('Retrieving file from server : %s', entry[0])
                 cur_file = os.path.normpath(entry[0])
@@ -1910,6 +1940,9 @@
         md5reoblk = {CLIENT: self.md5reobfclient, SERVER: self.md5reobfserver}
         outpathlk = {CLIENT: self.srcmodclient, SERVER: self.srcmodserver}
         src = {CLIENT: self.srcclient, SERVER: self.srcserver}
+        
+        if side == SERVER: #Noop out server side stuff
+            return
 
         # HINT: We need a table for the old md5 and the new ones
         md5table = {}